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Showing posts with label Publications. Show all posts
Showing posts with label Publications. Show all posts

Friday, October 15, 2010

Papers: How to Organize Electronic Journal Articles

I hate journal articles.  I don't hate publishing research.  Journal articles are the standard means of publicly communicating research findings to the rest of the scientific community and I don't hate that either.  What I hate is the fact that I need to keep track of literally hundreds of 10-20 page documents - it's a logistical nightmare.  My undergraduate adviser accomplished this with a pair of 5 drawer filing cabinets.  My current adviser has dozens of boxes of reprints sitting on shelves in our computing lab.  I generally prefer electronic versions for storage purposes, but that becomes a mess when getting papers from ADS, the arXiv, and individual journal websites - all of which use their own convention for filenames.  I hate the piles of papers, either physical or electronic, that result from journal articles.

However I have recently found something that helps with the mess:  a piece of software appropriately entitled Papers.  First a couple of disclaimers - it is not freely available (it costs $25.20 for students, $42 for everyone else), it only works for Mac OS X, and it's really designed for people in biological sciences, so it doesn't integrate as well with the arXiv as I would like.  Also since the software is developed by a small company (6 people, some of whom are also full-time scientists), upgrades and bug-fixes are often unpredictable.

Now that I've got the negative stuff out of the way, let's talk about why I'm writing this post.  The bottom line is that Papers saves me time trying to find papers I want and allows me to effectively carry my entire library of journal articles with me wherever I take my laptop.  On top of that, Papers can extract bibliographic information from PDF files and then export it in BibTex format, allowing me to easily create reference lists for papers.  On top of all that, it provides a nice front-end portal to almost all of the major databases like NASA ADS, the arXiv, Google Scholar, and more to provide useful features.  Let's say, for example, I want to know if one of the leading dynamo theorists and perhaps the most prodigious writers of journal articles in astrophysics (13 peer-reviewed journal articles so far this year) Axel Brandenburg has published anything new.  Papers automatically interfaces with ADS (or another database of your choosing) and downloads the titles and bibliographic references to all of recent entries for all of the authors in my database.  Here's a screen shot to illustrate my example and to generally show how spiffy Papers looks (click to embiggen):
Say what you will about Macs but their GUI's sure are pretty.

The software is also easy to use as a PDF reader with note-taking feature. I regularly use it to read new articles on my bus rides to and from campus. They even have a new version for the iPad that allows you to read and annotate PDF's on Apple's latest wonder. If anyone would like to send me an iPad I'd be happy to write a review on that feature as well.

So if you hate piles of paper on your desk or trying to organized PDF's on your hard drive and happen to use a Mac, check it out. It's not a perfect solution, but it is the best thing I've found to alleviate my hatred of journal articles yet.

Tuesday, March 9, 2010

Big Papers in Physics According to ADS

In the comments to Joe's last post we discussed SPIRES as a source of information on what is going on in physics. I don't want to discount SPIRES - it is a very complete and useful database for particle physics - but it doesn't tell the whole story. To get another angle let's take the top cited papers from the last decade according to NASA's Astrophysical Data System, the database most commonly used by astrophysicists. I have thrown out the "Reviews of Particle Physics" for the reasons stated in Joe's previous post. The full list follows but the summary by sub-field is this: cosmology had four papers (all from WMAP including the top 3 and #8), condensed matter had three papers (#4, #5, and #7), astrophysics outside of cosmology had two papers (#6 and #9), and AMO had one paper (#10).

What's my point? I agree completely that WMAP is one of the most productive scientific expiraments in human history, but what I'm trying to get across is that (a) there are other important things going on in physics right now and (b) each sub-field will create different lists of the "top papers" in physics.

Here's the full list (in case you are curious):

1) Citations: 5968
Spergel, D. N.; Verde, L.; Peiris, H. V.; Komatsu, E.; Nolta, M. R.; Bennett, C. L.; Halpern, M.; Hinshaw, G.; Jarosik, N.; Kogut, A.; and 7 coauthors
First-Year Wilkinson Microwave Anisotropy Probe (WMAP) Observations: Determination of Cosmological Parameters
2) Citations: 4227.
Spergel, D. N.; Bean, R.; Doré, O.; Nolta, M. R.; Bennett, C. L.; Dunkley, J.; Hinshaw, G.; Jarosik, N.; Komatsu, E.; Page, L.; and 12 coauthors
Three-Year Wilkinson Microwave Anisotropy Probe (WMAP) Observations: Implications for Cosmology
3) Citations: 2779
Bennett, C. L.; Halpern, M.; Hinshaw, G.; Jarosik, N.; Kogut, A.; Limon, M.; Meyer, S. S.; Page, L.; Spergel, D. N.; Tucker, G. S.; and 11 coauthors
First-Year Wilkinson Microwave Anisotropy Probe (WMAP) Observations: Preliminary Maps and Basic Results
4) Citations: 2593
Wolf, S. A.; Awschalom, D. D.; Buhrman, R. A.; Daughton, J. M.; von Molnár, S.; Roukes, M. L.; Chtchelkanova, A. Y.; Treger, D. M.
Spintronics: A Spin-Based Electronics Vision for the Future
5) Citations: 2455
Albert, Réka; Barabási, Albert-László
Statistical mechanics of complex networks
6) Citations: 2368
York, Donald G.; Adelman, J.; Anderson, John E., Jr.; Anderson, Scott F.; Annis, James; Bahcall, Neta A.; Bakken, J. A.; Barkhouser, Robert; Bastian, Steven; Berman, Eileen; and 134 coauthors
The Sloan Digital Sky Survey: Technical Summary
7) Citations: 2143
Dietl, T.; Ohno, H.; Matsukura, F.; Cibert, J.; Ferrand, D.
Zener Model Description of Ferromagnetism in Zinc-Blende Magnetic Semiconductors
8) Citations: 1988
Komatsu, E.; Dunkley, J.; Nolta, M. R.; Bennett, C. L.; Gold, B.; Hinshaw, G.; Jarosik, N.; Larson, D.; Limon, M.; Page, L.; and 9 coauthors
Five-Year Wilkinson Microwave Anisotropy Probe Observations: Cosmological Interpretation
9) Citations: 1984
Bruzual, G.; Charlot, S.
Stellar population synthesis at the resolution of 2003
10) Citations: 1955
Greiner, Markus; Mandel, Olaf; Esslinger, Tilman; Hänsch, Theodor W.; Bloch, Immanuel
Quantum phase transition from a superfluid to a Mott insulator in a gas of ultracold atoms

Sunday, March 11, 2007

Symmetry Magazine

There is a new magazine put together by Felmilab and SLAC called Symmetry Magazine: Dimensions of Particle Physics. It is free and has great stories relating to High Energy Physics. I've been checking it out and they really do a great job. There are a lot of good articles and they are all on the web for your perusal. As they say:
symmetry is a magazine about particle physics and its connections to other aspects of life and science, from interdisciplinary collaborations to policy to culture. It is published 10 times per year by Fermi National Accelerator Laboratory and Stanford Linear Accelerator Center, both national laboratories funded by the Office of Science of the US Department of Energy. The magazine is published in print and electronic editions, and anybody can subscribe free of charge through our subscription form